ACATN; AT-1; AT1; CCHLND; SPG42
The SLC33A1 gene is associated with Huppke-Brendel syndrome (MedGen UID: 482595, PMID: 22243965, 27306358). Additionally, the SLC33A1 gene has preliminary evidence supporting a correlation with autosomal dominant Hereditary spastic paraplegia 42 (SPG42) (MedGen UID: 393407).
Order this gene as a single gene test.
Invitae tests that include this gene:
SLC33A1 is a rare cause of hereditary spastic paraplegia, and the percentage of HSP attributed to pathogenic variants identified in SLC33A1 is unknown.
The SLC33A1 gene ecodes the acetyl-CoA transporter protein AT1, which mediates the acetylation of membrane gangliosides during their processing in the Golgi apparatus.
Invitae is a College of American Pathologists (CAP)-accredited and Clinical Laboratory Improvement Amendments (CLIA)-certified clinical diagnostic laboratory performing full-gene sequencing and deletion/duplication analysis using next-generation sequencing technology (NGS).
Our sequence analysis covers clinically important regions of each gene, including coding exons, +/- 10 base pairs of adjacent intronic sequence, and select noncoding variants. Our assay provides a Q30 quality-adjusted mean coverage depth of 350x (50x minimum, or supplemented with additional analysis). Variants classified as pathogenic or likely pathogenic are confirmed with orthogonal methods, except individual variants that have high quality scores and previously validated in at least ten unrelated samples.
Our analysis detects most intragenic deletions and duplications at single exon resolution. However, in rare situations, single-exon copy number events may not be analyzed due to inherent sequence properties or isolated reduction in data quality. If you are requesting the detection of a specific single-exon copy number variation, please contact Client Services before placing your order.
|Gene||Transcript reference||Sequencing analysis||Deletion/Duplication analysis|