Invitae MED12-Related Disorders Test

Ordering
  • Test code: 04716
  • Turnaround time:
    10–21 calendar days (14 days on average)
  • Preferred specimen:
    3mL whole blood in a purple-top tube
  • Alternate specimens:
    DNA or saliva/assisted saliva
  • Sample requirements
  • Request a sample kit
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Test description

The Invitae MED12-related disorders test analyzes the MED12-related gene, which are associated with FG syndrome type 1 (FGS1), Lujan syndrome and other MED12 spectrum disorders. MED12-related conditions are characterized by hypotonia, abnormalities of the corpus callosum, intellectual disability, and behavioral problems.

Previously, traditional testing strategies for MED12-related disorders included initial testing of exons 21 and 22 of the MED12 gene to evaluate for p.Arg961Trp (the recurring pathogenic variant for FGS1) and for other reported MED12 variants; when this initial testing was negative, sequence analysis of the remaining exons would have been considered. The Invitae MED12-related disorders test analyzes the full coding region of the MED12 gene and eliminates the need for the former tiered-test approach.

Genetic testing of this gene may confirm a diagnosis and help guide treatment and management decisions. Identification of a disease-causing variant can inform recurrence-risk assessment and genetic counseling.

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Primary panel (1 gene)

MED12

  • FG syndrome
    • Opitz-Kaveggia syndrome
  • Lujan syndrome

MED12-related conditions are multisystemic developmental disorders and generally characterized by hypotonia, abnormalities of the corpus callosum, intellectual disability, and behavioral problems. Affected individuals may also present with physical abnormalities including macrocephaly, distinctive facial features, anal abnormalities, broad thumbs, and big toes. Additional clinical findings may include heart defects, seizures, inguinal hernia, and undescended testes in males. The clinical presentation is variable; not all individuals with MED12-related disorders will present with every characteristic described above.

The clinical sensitivity for this test has not yet been determined.

MED12-related disorders are inherited in an X-linked manner.

The penetrance of MED12-related conditions is presumed to be 100% in males. To date, the published variants in MED12 (p.Arg961Trp, p.Gly958Glu, and p.Asn1007Ser) have not been observed in unaffected males. The clinical presentation is variable. Female carriers are typically unaffected.

The prevalence of MED12-related conditions is currently unknown.

Although formal diagnostic criteria have not been established for MED12-related conditions, the following clinical findings are suggestive of a clinical diagnosis: small ears, distinctive facial features (tall forehead; down-slanted palpebral fissures; long, narrow face), congenital anomalies (heart or skeletal defects; abnormality of the corpus callosum), macrocephaly, low muscle tone, and a characteristic eager-to-please behavior.

Assay and technical information

Invitae is a College of American Pathologists (CAP)-accredited and Clinical Laboratory Improvement Amendments (CLIA)-certified clinical diagnostic laboratory performing full-gene sequencing and deletion/duplication analysis using next-generation sequencing technology (NGS).

Our sequence analysis covers clinically important regions of each gene, including coding exons, +/- 10 base pairs of adjacent intronic sequence, and select noncoding variants. Our assay provides a Q30 quality-adjusted mean coverage depth of 350x (50x minimum, or supplemented with additional analysis). Variants classified as pathogenic or likely pathogenic are confirmed with orthogonal methods, except individual variants that have high quality scores and previously validated in at least ten unrelated samples.

Our analysis detects most intragenic deletions and duplications at single exon resolution. However, in rare situations, single-exon copy number events may not be analyzed due to inherent sequence properties or isolated reduction in data quality. If you are requesting the detection of a specific single-exon copy number variation, please contact Client Services before placing your order.

Gene Transcript reference Sequencing analysis Deletion/Duplication analysis
MED12 NM_005120.2