SLC35C1 is associated with autosomal recessive SLC35C1-congenital disorder of glycosylation (CDG-IIc) (MedGen UID 162913).
Order this gene as a single gene test.
Invitae tests that include this gene:
SLC35C1-CDG (CDG-IIc) is a rare cause of congenital disorders of glycosylation, and the percentage of cases attributed to pathogenic variants in SLC35C1 is unknown.
The SLC35C1 gene encodes the GDP-fucose transporter, which is essential to transport fucose to the golgi lumen. Once in the golgi lumen fucosyltransferases can attach fucose to glycoconjugates. One important fucosylated glycan, sialyl-Lewis X is needed for the granulocyte migration (PMID: 24403049).
Invitae is a College of American Pathologists (CAP)-accredited and Clinical Laboratory Improvement Amendments (CLIA)-certified clinical diagnostic laboratory performing full-gene sequencing and deletion/duplication analysis using next-generation sequencing technology (NGS).
Our sequence analysis covers clinically important regions of each gene, including coding exons, +/- 10 base pairs of adjacent intronic sequence, and select noncoding variants. Our assay provides a Q30 quality-adjusted mean coverage depth of 350x (50x minimum, or supplemented with additional analysis). Variants classified as pathogenic or likely pathogenic are confirmed with orthogonal methods, except individual variants that have high quality scores and previously validated in at least ten unrelated samples.
Our analysis detects most intragenic deletions and duplications at single exon resolution. However, in rare situations, single-exon copy number events may not be analyzed due to inherent sequence properties or isolated reduction in data quality. If you are requesting the detection of a specific single-exon copy number variation, please contact Client Services before placing your order.
|Gene||Transcript reference||Sequencing analysis||Deletion/Duplication analysis|