Associated disorders

The SIX1 gene is associated with autosomal dominant branchiootorenal (BOR) spectrum disorders (MedGen UID: 333995). Additionally, the SIX1 gene has preliminary evidence supporting a correlation with autosomal dominant deafness (MedGen UID: 343162)

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The SIX1 gene encodes the homeobox protein SIX1, a transcription factor that interacts with the EYA proteins to regulate transcriptional activation. It is thought to play a role in development of the nose, kidney, muscle and inner ear.

Assay and technical information

Invitae is a College of American Pathologists (CAP)-accredited and Clinical Laboratory Improvement Amendments (CLIA)-certified clinical diagnostic laboratory performing full-gene sequencing and deletion/duplication analysis using next-generation sequencing technology (NGS).

Our sequence analysis covers clinically important regions of each gene, including coding exons, +/- 10 base pairs of adjacent intronic sequence, and select noncoding variants. Our assay provides a Q30 quality-adjusted mean coverage depth of 350x (50x minimum, or supplemented with additional analysis). Variants classified as pathogenic or likely pathogenic are confirmed with orthogonal methods, except individual variants that have high quality scores and previously validated in at least ten unrelated samples.

Our analysis detects most intragenic deletions and duplications at single exon resolution. However, in rare situations, single-exon copy number events may not be analyzed due to inherent sequence properties or isolated reduction in data quality. If you are requesting the detection of a specific single-exon copy number variation, please contact Client Services before placing your order.

Gene Transcript reference Sequencing analysis Deletion/Duplication analysis
SIX1 NM_005982.3